PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0159s00300.1
Common NameLR48_Vigan05g150200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 259aa    MW: 28918.3 Da    PI: 4.4021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0159s00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1954104256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Vang0159s00300.1  54 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 104
                       59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-3353112No hitNo description
Gene3DG3DSA:3.30.730.101.6E-3254112IPR001471AP2/ERF domain
PROSITE profilePS5103222.99854111IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2354112IPR016177DNA-binding domain
SMARTSM003806.2E-4054117IPR001471AP2/ERF domain
PRINTSPR003673.2E-115566IPR001471AP2/ERF domain
PfamPF008471.1E-1255104IPR001471AP2/ERF domain
PRINTSPR003673.2E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAATNGGKFD VGDETHNFSQ KGSESVDWEI EKGNSVDGRP LFRPPTQPIN TTKLYRGVRQ  60
RHWGKWVAEI RLPRNRTRLW LGTFDTAEDA AMAYDREAFK LRGENARLNF PEMFLNKDKN  120
EQVEEEPSSP VQDQHEQKPV PVGRDMPREE SNENDSGIGS SDATVSDEVH AAAASAEGGD  180
GVSQELVWGE MSAWFNAIPA AWGPGSPMWD DLDPTNNLLY QSHVPFSNSN QQEMNDASDD  240
AQRHEHNTGS GYLWKDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A5e-2153111463ATERF1
2gcc_A5e-2153111463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491721.11e-161PREDICTED: ethylene-responsive transcription factor ERF053
SwissprotQ9SKT18e-61ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A0L9UMG31e-164A0A0L9UMG3_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UMU41e-163A0A0L9UMU4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SHF91e-163A0A0S3SHF9_PHAAN; Uncharacterized protein
STRINGGLYMA13G37451.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-62ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]